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Data Visualization Tools

This book presents some open source options for Data visualization

Fiji plugin for annotating movies with custom arrows

Original work by Stefan Daetwyler, Carl D. Modes and Reto Fiolka.

Fiji plugin for annotating movies with custom arrows

References and example

The Fiji plugin for annotating movies with custom arrows was developed by Stephan Daetwyler, Carl D.Modes and Reto Fiolka at UT SouthWestern.

To read about it and acknowledge the authors, please refer to this publication.

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Fiji plugin for annotating movies with custom arrows

Plugin installation

Complete instructions for plugin installation can be found in this publication.

The GitHub page with the source code can be found here.

Here is a Youtube video with a tutorial to install and use the plugin.

Napari

Napari

Napari: a fast, interactive viewer for multi-dimensional images in Python

 

If you are using Python for image analysis already, Napari is a great package to help you visualize and render your data!

 

Documentation and downloads can be found on this page.

Below is an example of 3D rendering in Napari.

 

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Napari offers a lot of usage options such as the ones listed below. 

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PetaKit5D

CLIJ: GPU-accelerated image processing for everyone